Tags give the ability to mark specific points in history as being important
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v1.3
Release: magatt-1.376bf22e3 · ·NEW: ISBPs anchoring on target genome is now included in the pipeline ISBPs are provided as a BED file. Their sequences are extracted from the source genome with `bedtools getfasta` and then mapped on the target genome using `bwa mem`
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v1.2
ed93ca70 · ·Major improvements: - GMAP rescue on whole genome now run at the end of each chromosome batch. Major boost in execution time of the whole pipeline - GMAP index: the indexing of the target with gmap_build has been removed. the index must be specified in the config.yaml file with `targetGmapIndex` (for -d option of gmapl) and `targetGmapIndexPath` (for -D option of gmapl) Bugs: some bugs were corrected - reformatGmapWGGFF.py : bad initialisation of chromosomeMap dictionary - renameGffID.py: bad initialisation of chromosomeMap dictionary
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v0.3
fab0779b · ·New version with Whole genome Gmap results integrated into the final GFF. CDS are also validated using fastavalidcds from exonerate
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