M

MIAT software

metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.

This project is the source repository of the CRAN package 'hicream' https://cran.r-project.org/package=hicream.

It performs Hi-C data differential analysis based on pixel-level differential analysis and a post hoc inference strategy to quantify signal in clusters of pixels. Clusters of pixels are obtained through a connectivity-constrained two-dimensional hierarchical clustering.

mixKernel is a multiple kernel framework that allows to integrate multiple datasets of various types into a single analysis. The package is published on CRAN: https://cran.r-project.org/package=mixKernel

erecord web services, web solutions for VLE models of RECORD platform