Test bowtie2 as a mapping tool
Compare bowtie2 with BWA-MEM2, investigate mapq60 filter, end to end option and try to reduce the gap in the number of mapped reads between mapping directly on contigs or on bins.
Évolutions importantes à venir autour de Mattermost (chat.forge.inrae.fr). Plus d'infos sur notre blog.
Compare bowtie2 with BWA-MEM2, investigate mapq60 filter, end to end option and try to reduce the gap in the number of mapped reads between mapping directly on contigs or on bins.