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Repository code for the article: Neuvial Pierre, Randriamihamison Nathanaël, Chavent Marie, Foissac Sylvain, and Vialaneix Nathalie (2023) A two-sample tree-based test for hierarchically organized genomic signals. Journal of the Royal Statistical Society, Series C, 73(3), 774–795. https://dx.doi.org/10.1093/jrsssc/qlae011

FAIDARE: FAIR Data-finder for Agronomic Research

It provides web services (based on the BrAPI standard) and a web interface with easy to use filters to facilitates the access to plant datasets from a federation of sources.

Scripts for the analysis described in the paper "Major reorganization of chromosome conformation during muscle development in pig" (Marti-Marimon et al, 2021).

http://dx.doi.org/10.3389/fgene.2021.748239

Site web de MIAT

PREVIEW : https://miat-com.pages-forge.inrae.fr/miat_website (Pour voir vos modifications après un commit, avant que ça ne soit validé)

ASSIGNEZ VOS MERGE REQUESTS à votre correspondant d'équipe/axe : @samuel.buchet (OpTeam), @leo.saulieres (DecA), @bcharlier (ASAP), @benjamin.linard (BioComp), @philippe.bordron (Genotoul) ou @rtrepos (RECORD)

https://genotoul-bioinfo.pages-forge.inrae.fr/d-genies/dgenies-new-proto-ui

This repository contains various sources for INRAE documents in LaTeX:

Beamer template for INRAE presentation. This is an unofficial template, inspired by the official ppt presentation template, provided as is and without any guarantee. Images remain the property of INRAE.

CSS files. They include several unofficial templates, without the original comment and inspired by CSS report files (évaluations et annexes).

Pipeline Nextflow

metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.