test_installation failed

Hi,

I am having trouble installing ICEscreen. I am trying to install it on a server.

As suggested in the documentation, I didn't install it in my base Conda environement, so I firstly ran : conda deactivate

Then I ran:

conda create -y --name icescreen_env_1-3-2 icescreen -c conda-forge -c bioconda

conda activate icescreen_env_1-3-2

These steps seem to have worked. However, when I run icescreen --test_installation, I get the following message:

After verification, I found the origin of this problem: $CONDA_BASE contains /usr instead of /network/rit/lab/andamlab/bin/miniconda3/. If I try conda info --base directly on my terminal, it correctly returns /network/rit/lab/andamlab/bin/miniconda3/. If I rename my .bashrc file so it is not automatically sourced when I connect on the server, conda info --base now returns /usr. This can be easly fixed by adding source ~/.bashrc at the beggining of the icescreen script. However it is a werid problem, do you know whether it comes from the script or whether the problem is on my side?

Yet, icescreen --test_installation still does not work:

To note, icescreen_test is identical to icescreen, execpt for my modificatin related to $CONDA_BASE. THe first two lines it returns are due to my modifications for the verification.

I also tried running icescreen on the test dataset, I get the following :output_test_1.out It seems that it cannot find the module Bio. I checked channels, I get the output shown on the documentation.

Do you have any idea how to fix this?

Thank you,

Héloïse