- New: egne-ep.sh: add --profile and --outdir parameters - New: new statistics output files (gene coverage, multimapping stats) - New: specific Helixer parameters for fungi/vertebrate and invertebrate (authors provided) - Fix: locus_tag_prefix to locustag_prefix - Fix: make pipeline compliant with "process.scratch = true" for slow filesystems - Fix: independent_strand_annotation=false - Update: change main script egn-ep.nf to main.nf