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Juicer workflow, but compressed :) (Using BAM instead of SAM)

shinySbm is a package containing a shiny application. This application is build for network analysis based on the sbm package made by Chiquet J, Donnet S and Barbillon P (2023) CRAN. It allow to apply and explore the outputs of a Stochastic Block Model. It is useful if you want to analyse your data (could be adjacency matrix or edges list) without R language knowledge or to learn the basic lines of the sbm package.

Landscape Epidemiology and Evolution R package

Docs

CRAN

Shiny app || Shiny Multi app

Resources I would like to share

Resources I would like to share

phd thesis obsidian vault for versioning and cloud backup

GWT experiments: minimum and basic dependencies to run on Tomcat along with code quality checkers.

Repository code for the article: Neuvial Pierre, Randriamihamison Nathanaël, Chavent Marie, Foissac Sylvain, and Vialaneix Nathalie (2023) A two-sample tree-based test for hierarchically organized genomic signals. Journal of the Royal Statistical Society, Series C, 73(3), 774–795. https://dx.doi.org/10.1093/jrsssc/qlae011

Scripts for the analysis described in the paper "Major reorganization of chromosome conformation during muscle development in pig" (Marti-Marimon et al, 2021).

http://dx.doi.org/10.3389/fgene.2021.748239