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FAIDARE: FAIR Data-finder for Agronomic Research

It provides web services (based on the BrAPI standard) and a web interface with easy to use filters to facilitates the access to plant datasets from a federation of sources.

Site web de MIAT

PREVIEW : https://miat-com.pages-forge.inrae.fr/miat_website (Pour voir vos modifications après un commit, avant que ça ne soit validé)

ASSIGNEZ VOS MERGE REQUESTS à votre correspondant d'équipe/axe : @samuel.buchet (OpTeam), @leo.saulieres (DecA), @bcharlier (ASAP), @benjamin.linard (BioComp), @philippe.bordron (Genotoul) ou @rtrepos (RECORD)

The goal of this package is to help users in using Capsis software and compile reports for field workshops. The workshop consist in predicting management effects on forest stand with Samsara2 model within Capsis platform.

http://martelosim.lessem.forge.inrae.fr/

Le portail de données phénologiques du réseau TEMPO permet la recherche et le téléchargement de données issues de différentes sources ouvertes ou soumises à autorisation.

Policies definition for MTD's GDC in GitOps

part of the ANR D2KAB project, this repository is dedicated to the construction of semantic resources (RDF dataset and OWL ontologies) that will represent plant phenological development stages for agricultural practices.

the ontology to describe the interaction between organisms and cultivated plants

Partie applicative d'AgroMetInfo.

Pipeline Nextflow

metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.

PAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...

Software Development Kit for the Geospatial Data Center of "la Maison de la Télédédection"

F3MR is a R package that help to analyze food microbiome omics data based on dedicated and curated metabolic modules based on extensive literature review. It belongs to F3M software suite developed by INRAE Food Microbial Ecology lab

Java library for metabolic networks

𝐂𝐀𝐖𝐄𝐓 (Calculation of Agronomical Water needs and EvapoTranspiration) is an open-source tool for automatic estimation of agricultural water needs