Explore projects

panREPET is a pipeline detecting shared Transposable Element (TE) insertions among a pangenome. It takes in charge multiple de novo whole-genome assemblies of the same species. It compares TE copies between each pair of genomes then identifies TE copies shared by a group of individuals.

FAIR-DATA management application stack for laboratory experiment

EuGene Eukaryote Pipeline - Nextflow rewrite of the legacy pipeline

Aligns reads to the reference genome with bwa mem. Production of g.vcf files with elprep. Genotyping with freebayes. Imputation and phasing with beagle and shapeit.

Documentation: https://mse-pathovect-49276b.pages-forge.inrae.fr

a crop simulation model for sunflower

https://sunflo.pages-forge.inrae.fr/sunflower/

rrda R package : Ridge Redundancy Analysis for High-Dimensional Omics Data