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This repository contains the scripts used to produce the experiments presented in

Jorge E., Hocking T.D., Neuvial P., Vialaneix N., and Foissac S. (2025) Posthoc inference for interpretable Hi-C differential analysis. preprint

These experiments aims at illustrating the use of the R package hicream that performs differential analysis of Hi-C data.

R-package proposing a framework to apply FAIR principles based on reports created using the bookdown R-package and published as a website (e.g. gitlab pages) and data located on a owncloud/nextcloud server

panTEannot serially annotates transposable elements from multiple genomes using a common reference library. The annotation is a light version of TEannot from REPET package. These annotations can be used as input for the panREPET tool.

Multivariate generalized Gaussian distribution, Multivariate Cauchy distribution, Multivariate t distribution. Distance between two distributions. Manipulation of these multivariate probability distributions.

Vue3 / NodeJS libraries providing webcomponents to easily query the FORVM resources.

An R package for the distribution of the ratio of Gaussian distributions: density function, parameter estimation, simulation. Application to vegetation index, such as chlorophyll fluorescence index.

Initiation au package R data.table (Plateforme de Biostatistique – Génopole Toulouse Midi-Pyrénées)

https://elisemaigne.pages-forge.inrae.fr/2023-datatable

Tutoriel pour le package R data.table.

Accompagne les supports de cours : https://elisemaigne.pages.mia.inra.fr/2023-datatable/index.html.

Voir le README pour le lancement du tutoriel.

Support pour mini atelier ggplot2 (2h) https://miat.pages-forge.inrae.fr/formations/mini-atelier-ggplot2

This project aims to create a opensilex instance running on docker-compose stack