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OLD - STOPPED - NOT UPDATED - See now siwaa-resources/rsiwaa

This project has been used to develop the rsiwaa package. Once ready and tested, it has been delivered to siwaa-resources/rsiwaa. Development stopped. See now current project siwaa-resources/rsiwaa.

This repository contains various sources for INRAE in LaTeX:

Beamer template for INRAE presentation. This is an unofficial template, inspired by the official ppt presentation template, provided as is and without any guarantee. Images remain the property of INRAE.

CSS files. It is also an unofficial template, without the original comment and inspired by the 2023 CSS files (évaluation allégée et annexe).

Nextflow pipeline to extract syntenic blocks using the MCScanX program.

Collapsing identical sequences read from FASTQ/A files into a unique sequence and reporting reads counts

Présentation au format RMarkdown réalisée avec 'Xaringan' de formation au package R 'airGRiwrm'

SHiNeMaS is a database with its web interface, dedicated to the management of the history of seed lots and related data like phenotyping, environment and cultural practices. SHiNeMaS is freely available under GNU Affero GPL Licence.

https://shinemas2.readthedocs.io/

The SeSAM R package allows fully automatic construction of two successive genetic maps: a first one including an optimized subset of markers ensuring the robustness of orders to a given statistical threshold, and a second one including almost all polymorphic markers. It can handle all common types of biparental mapping populations, including progenies obtained from crossing heterozygous parents. In addition to the automatic procedure, SeSAM includes many functions for interactive mapping, file formats conversions, and generates many graphs useful to assess the quality of data and maps.