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Share some notes and scripts on the use of STAC.

SHiNeMaS is a database with its web interface, dedicated to the management of the history of seed lots and related data like phenotyping, environment and cultural practices. SHiNeMaS is freely available under GNU Affero GPL Licence.

https://shinemas2.readthedocs.io/

Ensemble de scripts utilisés au LRF pour traiter les données d'amplicon sequencing 16S et ITS.

basis for development of interactive population dynamics web applications

shinySbm is a package containing a shiny application. This application is build for network analysis based on the sbm package made by Chiquet J, Donnet S and Barbillon P (2023) CRAN. It allow to apply and explore the outputs of a Stochastic Block Model. It is useful if you want to analyse your data (could be adjacency matrix or edges list) without R language knowledge or to learn the basic lines of the sbm package.

Fish migration monitoring, database connection and treatment

https://optirrighive.pages.mia.inra.fr/OptirrigBEET

Harvest and index meta data from BrAPI endpoints for data access through the plant-faidare data lookup portal (https://github.com/elixir-europe/plant-faidare).

Formation (supports de cours et TP) sur l'analyse statistique de données RNA-seq Formation proposée par la plateforme Genotoul-Bioinfo

Infer parameters of epidemic and phylodynamic models using Neural Posterior Estimation

fichiers de support pour EDO Sys Dyn - MAM3 EPU Nice Sophia

Repository code for the article: Neuvial Pierre, Randriamihamison Nathanaël, Chavent Marie, Foissac Sylvain, and Vialaneix Nathalie (2023) A two-sample tree-based test for hierarchically organized genomic signals. Preprint.