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L'application Dryades Viewer permet de visualiser les données de la BD Dryades regroupant les données forêt du Lessem.

https://dryades-viewer.sk8.inrae.fr

metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.

The goal of this package is to help users in using Capsis software and compile reports for field workshops. The workshop consist in predicting management effects on forest stand with Samsara2 model within Capsis platform.

http://martelosim.lessem.forge.inrae.fr/

MSNet main workflows and tutorial to process untargeted LCMS metabolomics data

A simple pipeline to assemble bacterial genomes from ONT sequencing

Source code of BIP software (Biological Image Processing)

Still under development

Repo for scripts or plugins that allow to do Time-SIFT processing with different software.

docker compose configs to use robots with tirrex workspace

SATLAND is an application to detect and characterize hotspots of change. It is based on Python libraries (xarray, Bfast, rasterio for back-end, Streamlit for Front-End)

Code and workflows for the analyses reported in “Dici: a novel DNA transposon reshaping the genome of the opportunistic yeast Diutina catenulata”

Formation (supports de cours et TP) sur l'analyse statistique de données RNA-seq Formation proposée par la plateforme Genotoul-Bioinfo

set of usefull mass spectrometry and proteomics utilities used by the PAPPSO team (http://pappso.inra.fr/). Get ion tables from peptides, SVG drawings of MS/MS annotated spectrum, expected intensity ratio of isotopes from a peptide....