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Nextflow pipeline creating a Neo4j Ortho_KB database.

job array allows managing list of jobs execution across sge and PBS scheduler system. each job is considered as an independent task. DAG management is also possible by defining constraints between job array

Docs : https://optirrighive.pages.mia.inra.fr/OptirrigCORE

What is “OptirrigCORE” package ? The OptirrigCORE package in R is based on the Optirrig model. It facilitates the extraction and formatting of observation data used by the model, as well as the integration of plant, soil and yield descriptions. It supports various analytical methods, such as Ex-Post and Ex-Ante analyses, with a view to drawing up an optimised irrigation schedule based on the criteria. The package includes all the calculation tools needed to describe biophysical processes with a generalist approach. It can be used as a dependency or complement to modify and reinterpret biophysical descriptions. What’s more, it automates the modeling process, the description of biophysical processes and the analysis of results and performance, guaranteeing a reproducible approach. It also makes it easy to compile results in automated reports.

Gestion des collections d'échantillon - management of samples collections

PASTE (Platform for Automated Simulation and Tools in Epidemiology) is a software pipeline that produces a web architecture for a decision-support tool based on mechanistic epidemiological models (written with EMULSION)

Implementation of the FAO CropWat model in an R package

Exploration interactive de scenario de simulation du modèle MF1.2-1ha du projet Atcha.

https://mf-12-1-ha.sk8.inrae.fr/ | https://shiny.sk8.inrae.fr/app/atcha-mf-12-1-ha | https://shiny.sk8.inrae.fr/app_direct/atcha-mf-12-1-ha

Docker image with Intel Fortran Compiler (and some other dev tools).

Scripts related with database development in stacomi.