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Some templates useful for Gitlab CI Yaml scripts.

part of the ANR D2KAB project, this repository is dedicated to the construction of semantic resources (RDF dataset and OWL ontologies) that will represent plant phenological development stages for agricultural practices.

Server : https://shiny.migale.inrae.fr/app/easy16S | Doc : https://easy16s.migale.inrae.fr/

Policies definition for MTD's GDC in GitOps

Model to simulate the spread of Map within and between herds via trade movements between dairy herds. Some control measures can be applied. Model is mechanistic and data-driven, stochastic, discrete-time and individual-based.

panTEannot serially annotates transposable elements from multiple genomes using a common reference library. The annotation is a light version of TEannot from REPET package. These annotations can be used as input for the panREPET tool.

https://cmidoux.pages-forge.inrae.fr/slides/

Pipeline Nextflow

https://sk8.pages-forge.inrae.fr/journee_shiny_inrae/edition_2025

pyotb is a library that enables easy use of the Orfeo Tool Box (OTB) in Python