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This repository is a toolbox for PFEM's GitLab projects: templates for README, CI/CD, docker images, ...

Geomatic tool for landscape discretization and pesticides transfert

Free-D libraries: a collection of C++ libraries

part of the ANR D2KAB project, this repository is dedicated to the construction of semantic resources (RDF dataset and OWL ontologies) that will represent plant phenological development stages for agricultural practices.

metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.

A Java library designed to factorize the implementation of Spring Boot microservices by eliminating redundant code across different services.

Free-D libraries: a collection of C++ libraries

R package for recovering and preparing useful data for damage appraisal in a French context

Caulifinder : a pipeline for automatic detection and annotation of caulimovirid endogenous viral elements in plant genomes